Papers written incorporating different analysis packages

Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data - Pengcheng Zhou in 2016

Tracking the Same Neurons across Multiple Days in Ca2+ Imaging Data - Yaniv Ziv in 2017

Fast non-negative deconvolution for spike train inference from population calcium imaging - Joshua T. Vogelstein in 2010

Accurate spike estimation from noisy calcium signals for ultrafast three-dimensional imaging of large neuronal populations in vivo - Thomas Deneux in 2016